PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.008G158200.1
Common NameB456_008G158200, LOC105762484
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family C2H2
Protein Properties Length: 209aa    MW: 22883.4 Da    PI: 8.2168
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.008G158200.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.30.000127799123
                        EEETTTTEEESSHHHHHHHHHHT CS
             zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                        ++C +C k F+++  L  H++ H
  Gorai.008G158200.1 77 FECRYCFKEFTNSQALGGHQNAH 99
                        89******************988 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576674.45E-772104No hitNo description
Gene3DG3DSA:3.30.160.601.7E-572103IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015711.46877104IPR007087Zinc finger, C2H2
PROSITE patternPS0002807999IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 209 aa     Download sequence    Send to blast
MAKDACSSAY HTCDSGNGYS QAGSCGGKKL KLFGFELSPS KNSGNFLKGC VEGDESINSS  60
SRAAGVDDGD STDEKKFECR YCFKEFTNSQ ALGGHQNAHK KERMKKKRLQ LQAKRAASIN  120
SYLQPLHDSC YPHHFTLYQE PPQISFDQYQ QEARLGASQI IHFQQDSSIF TITPADSTKP  180
SKHWCKSLDL QLGLSLQSTI HSSSGTGI*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012435722.11e-154PREDICTED: zinc finger protein 5-like
TrEMBLA0A0D2U3Z11e-154A0A0D2U3Z1_G
STRINGVIT_01s0026g00850.t017e-52(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM73252541
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06650.16e-17C2H2 family protein
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]